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Rapamycin, FK506, and FK520 are immunosuppressant macrolactone natural products comprised of predominantly polyketide-based core structures. A single nonproteinogenic pipecolic acid residue is installed into the scaffold by a nonribosomal peptide synthetase that also performs the subsequent macrocyclization step at the carbonyl group of this amino acid. It has been assumed that pipecolic acid is generated from lysine by the cyclodeaminases RapL/FkbL. Herein we report the heterologous overexpression and purification of RapL and validate its ability to convert L-lysine to L-pipecolic acid by a cyclodeamination reaction that involves redox catalysis. RapL also accepts L-ornithine as a substrate, albeit with a significantly reduced catalytic efficiency. Turnover is presumed to encompass a reversible oxidation at the alpha-amine, internal cyclization, and subsequent re-reduction of the cyclic Delta1-piperideine-2-carboxylate intermediate. As isolated, RapL has about 0.17 equiv of tightly bound NAD+, suggesting that the enzyme is incompletely loaded when overproduced in E. coli. In the presence of exogenous NAD+, the initial rate is elevated 8-fold with a K m of 2.3 muM for the cofactor, consistent with some release and rebinding of NAD+ during catalytic cycles. Through the use of isotopically labeled substrates, we have confirmed mechanistic details of the cyclodeaminase reaction, including loss of the alpha-amine and retention of the hydrogen atom at the alpha-carbon. In addition to the characterization of a critical enzyme in the biosynthesis of a medically important class of natural products, this work represents the first in vitro characterization of a lysine cyclodeaminase, a member of a unique group of enzymes which utilize the nicotinamide cofactor in a catalytic manner.

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Metal catalyst and ligand design,
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A new diastereoselective pathway for the total synthesis of (+)-dexoxadrol, first asymmetric synthesis of (-)-epi-dexoxadrol and formal synthesis of conhydrine and (+)-lentiginosine is presented using commercially available (-)-pipecolinic acid. The key reactions utilized are Sharpless asymmetric dihydroxylation and Wittig reaction. The paper further describes the study of effect of protecting groups on dihydroxylation of a terminal olefin in piperidine ring system.

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The versatile “ring switching” approach to antagonists of glutamate receptors has been extended to the use of delta-lactam urethanes. Three different types of delta-lactam urethane aldehydes 17, 26 and 59 have been used successfully in this approach. Altering diastereoisomeric ratios in the synthesis by use of a hindered proton source has allowed homochiral products with two chiral centres to be obtained. Although the delta-lactam urethane system did not prove to be as versatile as the corresponding pyroglutamate or beta-lactam urethanes, a variety of homologues of glutamate antagonists have been prepared.

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The present invention generally relates to the field of plant protection products and con- cerns a method for inducing acquired resistance in a plant to a plant pathogen, comprising obtaining or providing a composition comprising 1-hydroxypiperidine-2-carboxylic acid or a salt or derivative thereof, and contacting a plant with said composition, thereby inducing acquired resistance in the plant to the plant pathogen. Further, the present invention relates to the use of 1-hydroxypiperidine-2-carboxylic acid or a salt or derivative thereof for in- ducing acquired resistance in a plant to a plant pathogen. Also encompassed by the present invention are a plant seed coated with a composition comprising 1-hydroxypiperidine-2- carboxylic acid or a salt or derivative thereof, an irrigation system filled with irrigation water comprising 1-hydroxypiperidine-2-carboxylic acid or a salt or derivative thereof in a concentration of at least0.1 mM, and a composition comprising 1-hydroxypiperidine-2- carboxylic acid or a salt or derivative thereof in a concentration of at least 0.1 mM, and a plant nutrient and/or a further plant protection product or a salt or derivative thereof.

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Tetramethyl(alky or aryl)cyclopentadienes were synthesized and the organometallic half-sandwich iridium complexes of the form [(eta5-Cp?R)Ir(aa)Cl], Cp?R = tetramethyl(phenyl)cyclopentadienyl (Cp?Ph), tetramethyl(benzyl)cyclopentadienyl (Cp?Bn), tetramethyl(2-propyl)cyclopentadienyl (Cp?iPr), or tetramethyl(cyclohexyl)cyclopentadienyl (Cp?Cy) were prepared and characterized. The complexes adopt a piano stool configuration, forming diastereomers, with ratios similar to reported [(eta5-Cp?)Ir(aa)Cl] complexes. The complexes display an intermolecular hydrogen bonding network in the solid state. These complexes were tested for the asymmetric transfer hydrogenation of several ketones, showing that the R of the Cp?R drastically impacts both selectivity and rate of reaction. Additionally, severe solvent effects are displayed when the reaction media is changed from aqueous to organic solvent.

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Reference:
Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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Disclosed are compounds of Formula (I), methods of using the compounds as immunomodulators, and pharmaceutical compositions comprising such compounds. The compounds are useful in treating, preventing or ameliorating diseases or disorders such as cancer or infections.

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Reference:
Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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An investigation has been carried out into the Schlack-Kumpf reaction, i.e., the reaction of amino acids with a mixture of acetic anhydride, acetic acid and sodium thiocyanate (occasionally ammonium thiocyanate was used). particular emphasis was placed on the reactions with amino acids containing sensitive or functional side chains, i.e., serine, threonine, arginine, proline, lysine, histidine, cystein, and aspartic acid and glutamic acids.The reaction of serine, and certain of its O- and N-substituted derivatives, takes an unusual course to give an acetylated thiohydantoin derivative of cystein.Correspondingly, threonine gives an acetylated thiohydantoin derivative of beta-methylcystein.Similar reactions occured with the 3-phenylthiohydantoin derivatives of serine and of threonine to give acetylated thiohydantoin derivatives of cysteine and of beta-methylcysteine respectively.

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Reference:
Metal catalyst and ligand design,
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Total synthesis of optically pure (+)-Fuligocandin A from L-proline has been achieved in 29% overall yield. The key step, one-pot reductive cyclodehydration of the chiral 2-nitrophenyl-1,3-dicarbonyl compound, proceeds with >98% retention of configuration. This method represents a convenient approach to the synthesis of 2-methylenebenzo[e][1,4]diazepin-5-ones containing one chiral center. A series of benzo[e][1,4]diazepin-5-one derivatives have been successfully synthesized with retention of chirality by the one-pot reaction developed in this work. A possible reductive cyclodehydration mechanism was also proposed.

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Purpose: To synthesize a series of analogues of 1,3,4-oxadiazole and to evaluate their antibacterial activity. Methods: Ethyl piperidin-4-carboxylate (1) was mixed with 4-toluenesulfonyl chloride (2) in benignant conditions to yield ethyl 1-(4-toluenesulfonyl)piperidin-4-carboxylate (3) and then 1-(4-toluenesulfonyl)piperidin-4-carbohydrazide (4). Intermolecular cyclization of 4 into 2-mercapto-5-(1-(4-toluenesulfonyl) piperidin-4-yl)-1,3,4-oxadiazole (5) was obtained on reflux with CS2 in the presence of KOH. Molecule 5 was stirred with alkyl halides, 6a-i, in DMF in the presence of LiH to synthesize the final compounds, 7a-i. The structures of these molecules were elucidated by Fourier transform infra-red (FTIR) spectroscopy, proton nuclear magnetic resonance (1H-NMR) and electron impact mass spectrometry (EI-MS). Antibacterial activity was evaluated against five bacterial strains, namely, Salmonella typhi, Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Bacillus subtilis, with ciprofloxacin used as standard antibacterial agent. Results: Out of nine synthesized derivatives, compound 7a was the most active against three bacterial strains, S. typhi, E. coli and P. aeruginosa, with minimum inhibitory concentration (MIC) of 9.11 ± 0.40, 9.89 ± 0.45 and 9.14 ± 0.72 muM, respectively, compared with 7.45 ± 0.58, 7.16 ± 0.58 and 7.14 ± 0.18 muM, respectively, for the reference standard (ciprofloxacin). Similarly, compounds 7a – 7c showed relatively good antibacterial activity against B. subtilis strain while compound 7e – 7g revealed good results against S. typhi bacterial strain. Conclusion: The results indicate that S-substituted derivatives of the parent compound are more effective antibacterial agents than the parent compound, even with minor differences in substituents.

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Metal catalyst and ligand design,
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New approach is developed to the synthesis of cyclic amino acids derivatives. Unsaturated tertiary amines react with ethyl diazoacetate under the catalysis by copper catalyst Cu(F3acac)2 leading to the formation of products of [2,3]-sigmatropic rearrangement which via the metathesis of double bonds undergo a ring closure. The subsequent hydrogenation of compounds obtained furnished esters of 6- and 7-membered cyclic alpha-amino acids. Besides the racemic also optically active compounds were obtained, in particular, esters of (R)- and (S)-pipecolic acid.

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